If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ), 'gf_id' => 'HOM05D000957', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000957' ), 'data_identifier' => 'HOM05D000957', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000957', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '625', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16580' => 'bna', 'A02p35630' => 'bna', 'A03p25840' => 'bna', 'A03p64810' => 'bna', 'A06p07480' => 'bna', 'A06p29760' => 'bna', 'A06p32000' => 'bna', 'A07p36940' => 'bna', 'A09p07950' => 'bna', 'A09p35150' => 'bna', 'Aa31LG11G670' => 'aar', 'Aa31LG1G4170' => 'aar', 'Aa31LG1G4250' => 'aar', 'Aa31LG2G4930' => 'aar', 'Aa31LG6G6780' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.351' => 'aag', 'Actinidia04731' => 'ach', 'Actinidia06010' => 'ach', 'Actinidia06386' => 'ach', 'Actinidia15065' => 'ach', 'Actinidia19329' => 'ach', 'Actinidia20969' => 'ach', 'Actinidia25869' => 'ach', 'Actinidia33075' => 'ach', 'Ah.02g110570' => 'amhyb', 'Ah.11g051510' => 'amhyb', 'AL1G21520' => 'aly', 'AL2G29890' => 'aly', 'AL4G46660' => 'aly', 'AL5G17210' => 'aly', 'AL8G39980' => 'aly', 'Aqoxy2G02570' => 'aox', 'Aqoxy2G02571' => 'aox', 'Aqoxy3G01076' => 'aox', 'Aqoxy3G02887' => 'aox', 'Aqoxy5G02751' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0X8JA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CA48PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL0K3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BECR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG0MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8TCL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7F8U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P82F2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U07FV9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDQ67E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5FTYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WZ2K1N' => 'arhy', 'AT1G10660' => 'ath', 'AT1G70505' => 'ath', 'AT2G47115' => 'ath', 'AT3G27770' => 'ath', 'AT5G62960' => 'ath', 'ATR0693G443' => 'atr', 'ATR1091G100' => 'atr', 'Atru.chr11.2069' => 'acertr', 'Atru.chr5.913' => 'acertr', 'Atru.chr6.2345' => 'acertr', 'Atru.chr8.1446' => 'acertr', 'Atru.chr9.2493' => 'acertr', 'AUR62005412' => 'cqu', 'AUR62008195' => 'cqu', 'AUR62011738' => 'cqu', 'AUR62011739' => 'cqu', 'AUR62014073' => 'cqu', 'AUR62024572' => 'cqu', 'AUR62030947' => 'cqu', 'BcaB02g09712' => 'bca', 'BcaB03g14815' => 'bca', 'BcaB03g16481' => 'bca', 'BcaB04g19956' => 'bca', 'BcaB05g24581' => 'bca', 'BcaB06g28062' => 'bca', 'BcaB07g30145' => 'bca', 'BcaC01g00543' => 'bca', 'BcaC01g02545' => 'bca', 'BcaC01g05046' => 'bca', 'BcaC03g15196' => 'bca', 'BcaC03g17484' => 'bca', 'BcaC04g23377' => 'bca', 'BcaC05g24961' => 'bca', 'BcaC06g33788' => 'bca', 'BcaC07g38583' => 'bca', 'BcaC07g38622' => 'bca', 'BcaC08g46499' => 'bca', 'BolC2t08823H' => 'bol', 'BolC2t11508H' => 'bol', 'BolC3t15430H' => 'bol', 'BolC3t18623H' => 'bol', 'BolC3t20392H' => 'bol', 'BolC5t29647H' => 'bol', 'BolC6t39510H' => 'bol', 'BolC7t44201H' => 'bol', 'BolC8t49024H' => 'bol', 'BolC9t53812H' => 'bol', 'BraA02t06714Z' => 'bra', 'BraA02t08565Z' => 'bra', 'BraA03t11798Z' => 'bra', 'BraA03t15544Z' => 'bra', 'BraA06t23953Z' => 'bra', 'BraA06t25923Z' => 'bra', 'BraA07t31257Z' => 'bra', 'BraA08t35297Z' => 'bra', 'BraA09t36446Z' => 'bra', 'C02p06610' => 'bna', 'C02p27770' => 'bna', 'C02p54460' => 'bna', 'C03p30780' => 'bna', 'C03p63640' => 'bna', 'C03p81260' => 'bna', 'C05p09010' => 'bna', 'C06p44440' => 'bna', 'C06p44470' => 'bna', 'C07p13800' => 'bna', 'C07p36890' => 'bna', 'C07p49610' => 'bna', 'C08p13900' => 'bna', 'C09p09000' => 'bna', 'CAN.G1166.2' => 'can', 'CAN.G1280.42' => 'can', 'CAN.G130.5' => 'can', 'CAN.G206.9' => 'can', 'CAN.G2085.4' => 'can', 'CAN.G546.29' => 'can', 'CAN.G838.5' => 'can', 'CANSAT01G3057' => 'cansat', 'CANSAT25G2543' => 'cansat', 'CANSAT25G3908' => 'cansat', 'CANSAT64G1406' => 'cansat', 'CANSAT80G1341' => 'cansat', 'CARHR010840' => 'chi', 'CARHR063710' => 'chi', 'CARHR142490' => 'chi', 'CARHR149200' => 'chi', 'CARHR276770' => 'chi', 'Carub.0001s1015' => 'cru', 'Carub.0002s1720' => 'cru', 'Carub.0004s2985' => 'cru', 'Carub.0005s0631' => 'cru', 'Carub.0008s2328' => 'cru', 'Carub.0008s2367' => 'cru', 'Ca_03140_v3' => 'car', 'Ca_06588_v3' => 'car', 'Ca_07915_v3' => 'car', 'Ca_10251_v3' => 'car', 'Ca_21933_v3' => 'car', 'Ca_22506_v3' => 'car', 'Cc01_g21930' => 'ccan', 'Cc04_g12090' => 'ccan', 'Cc07_g01960' => 'ccan', 'Cc11_g15370' => 'ccan', 'CDE02G2234' => 'cde', 'CDE05G1306' => 'cde', 'CDE07G1830' => 'cde', 'Cfa004874' => 'cfa', 'Cfa004876' => 'cfa', 'Cfa007404' => 'cfa', 'Cfa009178' => 'cfa', 'Ciclev10017477m.g' => 'ccl', 'Ciclev10021203m.g' => 'ccl', 'Ciclev10023449m.g' => 'ccl', 'Ciclev10024034m.g' => 'ccl', 'Ciclev10032113m.g' => 'ccl', 'CiPaw.04G027000' => 'cil', 'CiPaw.05G186500' => 'cil', 'CiPaw.06G070100' => 'cil', 'CiPaw.07G122800' => 'cil', 'CiPaw.07G122900' => 'cil', 'CiPaw.08G084700' => 'cil', 'CiPaw.11G024800' => 'cil', 'ClCG01G013220' => 'cla', 'ClCG08G017870' => 'cla', 'ClCG10G011740' => 'cla', 'ClCG10G014030' => 'cla', 'COL.COLO4_23166' => 'col', 'COL.COLO4_24213' => 'col', 'COL.COLO4_30067' => 'col', 'Cpa.g.sc108.32' => 'cpa', 'Cpa.g.sc2197.1' => 'cpa', 'Cpa.g.sc543.4' => 'cpa', 'Cpa.g.sc543.5' => 'cpa', 'Cre03.g159700' => 'cre', 'CsaV3_1G008580' => 'csa', 'CsaV3_2G024760' => 'csa', 'CsaV3_3G031600' => 'csa', 'CsaV3_3G042640' => 'csa', 'CSS0011608' => 'camsi', 'CSS0013937' => 'camsi', 'CSS0021087' => 'camsi', 'CSS0023164' => 'camsi', 'CSS0029238' => 'camsi', 'CSS0030946' => 'camsi', 'CSS0036056' => 'camsi', 'DCAR_002927' => 'dca', 'DCAR_005731' => 'dca', 'DCAR_007073' => 'dca', 'DCAR_011244' => 'dca', 'DCAR_016481' => 'dca', 'DCAR_021572' => 'dca', 'DCAR_021705' => 'dca', 'DCAR_026149' => 'dca', 'DCAR_031118' => 'dca', 'Dinv12101' => 'din', 'Dinv20639' => 'din', 'Dinv33155' => 'din', 'Dinv33156' => 'din', 'Dinv35090' => 'din', 'Dinv35403' => 'din', 'Dinv38574' => 'din', 'Duzib119G0002' => 'dzi', 'Duzib138G0103' => 'dzi', 'Duzib147G1160' => 'dzi', 'Duzib205G0183' => 'dzi', 'Duzib251G0199' => 'dzi', 'ECA232G1303' => 'eca', 'ECA232G3157' => 'eca', 'ECA234G1854' => 'eca', 'ECA238G3653' => 'eca', 'ECA246G3578' => 'eca', 'EL10Ac5g10732' => 'bvu', 'EL10Ac6g13706' => 'bvu', 'EL10As5g23583' => 'bvu', 'EL10As5g23585' => 'bvu', 'Eucgr.B00298' => 'egr', 'Eucgr.B03308' => 'egr', 'Eucgr.H00893' => 'egr', 'Eucgr.K02830' => 'egr', 'Eucgr.K03572' => 'egr', 'Eucgr.L02619' => 'egr', 'FAN02G3717' => 'fan', 'FAN04G2153' => 'fan', 'FAN05G1922' => 'fan', 'FAN05G3090' => 'fan', 'FAN06G3881' => 'fan', 'FAN07G1630' => 'fan', 'FAN08G0314' => 'fan', 'FAN08G1630' => 'fan', 'FAN09G3791' => 'fan', 'FAN12G3714' => 'fan', 'FAN13G1227' => 'fan', 'FAN14G3981' => 'fan', 'FAN17G2640' => 'fan', 'FAN17G2770' => 'fan', 'FAN18G0577' => 'fan', 'FAN18G1379' => 'fan', 'FAN19G0058' => 'fan', 'FAN19G0349' => 'fan', 'FAN22G1708' => 'fan', 'FAN23G0101' => 'fan', 'FAN23G0452' => 'fan', 'FAN26G0258' => 'fan', 'FAN26G1592' => 'fan', 'FAN28G0289' => 'fan', 'FAN28G0878' => 'fan', 'FAN28G1740' => 'fan', 'FvH4_1g26510' => 'fve', 'FvH4_1g26530' => 'fve', 'FvH4_4g32871' => 'fve', 'FvH4_4g32900' => 'fve', 'FvH4_5g05450' => 'fve', 'FvH4_6g51020' => 'fve', 'FvH4_7g13960' => 'fve', 'Glyma.01G029100' => 'gma', 'Glyma.02G036100' => 'gma', 'Glyma.03G222800' => 'gma', 'Glyma.04G184500' => 'gma', 'Glyma.05G038700' => 'gma', 'Glyma.06G181400' => 'gma', 'Glyma.08G284900' => 'gma', 'Glyma.10G009500' => 'gma', 'Glyma.16G072600' => 'gma', 'Glyma.17G088300' => 'gma', 'Glyma.19G219900' => 'gma', 'Glyma.20G038500' => 'gma', 'Gohir.A03G137600' => 'ghi', 'Gohir.A03G137800' => 'ghi', 'Gohir.A05G313800' => 'ghi', 'Gohir.A06G055700' => 'ghi', 'Gohir.A08G121000' => 'ghi', 'Gohir.A12G121700' => 'ghi', 'Gohir.A12G274900' => 'ghi', 'Gohir.D02G160700' => 'ghi', 'Gohir.D02G160800' => 'ghi', 'Gohir.D05G315300' => 'ghi', 'Gohir.D06G054500' => 'ghi', 'Gohir.D08G142300' => 'ghi', 'Gohir.D12G125300' => 'ghi', 'Gohir.D12G275600' => 'ghi', 'Gorai.004G146600' => 'gra', 'Gorai.005G180800' => 'gra', 'Gorai.005G180900' => 'gra', 'Gorai.008G136300' => 'gra', 'Gorai.008G296100' => 'gra', 'Gorai.009G337300' => 'gra', 'Gorai.010G063700' => 'gra', 'GSVIVG01007726001' => 'vvi', 'GSVIVG01013780001' => 'vvi', 'GSVIVG01013782001' => 'vvi', 'GSVIVG01028199001' => 'vvi', 'GSVIVG01032440001' => 'vvi', 'HanXRQChr07g0198911' => 'han', 'HanXRQChr09g0254961' => 'han', 'HanXRQChr09g0272111' => 'han', 'HanXRQChr10g0278921' => 'han', 'HanXRQChr12g0383671' => 'han', 'HanXRQChr13g0414431' => 'han', 'HanXRQChr14g0446741' => 'han', 'HanXRQChr16g0504341' => 'han', 'HanXRQChr17g0539701' => 'han', 'Haze_05114' => 'cav', 'Haze_07515' => 'cav', 'Haze_12212' => 'cav', 'Haze_14702' => 'cav', 'Haze_14711' => 'cav', 'Hma1.2p1_0160F.1_g071090' => 'hma', 'Hma1.2p1_0408F.1_g146420' => 'hma', 'Hma1.2p1_0484F.1_g162860' => 'hma', 'Hma1.2p1_0484F.1_g162870' => 'hma', 'Hma1.2p1_0592F.1_g185440' => 'hma', 'Hma1.2p1_0993F.1_g245299' => 'hma', 'Hma1.2p1_0999F.1_g246370' => 'hma', 'Hma1.2p1_2165F.1_g315790' => 'hma', 'HPP92_001302' => 'vpl', 'Hund02752' => 'sun', 'Hund06008' => 'sun', 'Hund09447' => 'sun', 'Hund09676' => 'sun', 'Hund25369' => 'sun', 'Lalb_Chr05g0216731' => 'lal', 'Lalb_Chr07g0182791' => 'lal', 'Lalb_Chr08g0236601' => 'lal', 'Lalb_Chr09g0326291' => 'lal', 'Lalb_Chr10g0094061' => 'lal', 'Lalb_Chr10g0094071' => 'lal', 'Lalb_Chr11g0071461' => 'lal', 'Lalb_Chr16g0382151' => 'lal', 'Lj1A11T73' => 'lonja', 'Lj1g0013718' => 'lja', 'Lj1g0025134' => 'lja', 'Lj1g0026143' => 'lja', 'Lj2g0019765' => 'lja', 'Lj4g0023104' => 'lja', 'Lj4g0024186' => 'lja', 'Lj5A125T66' => 'lonja', 'Lj5g0015031' => 'lja', 'Lj6A808T44' => 'lonja', 'Lj9A446T63' => 'lonja', 'Lju41A39G66' => 'lonja', 'Lsat_1_v5_gn_0_19520' => 'lsa', 'Lsat_1_v5_gn_2_116440' => 'lsa', 'Lsat_1_v5_gn_2_91581' => 'lsa', 'Lsat_1_v5_gn_3_28520' => 'lsa', 'Lsat_1_v5_gn_4_183220' => 'lsa', 'Lsat_1_v5_gn_4_5261' => 'lsa', 'Lsat_1_v5_gn_4_75001' => 'lsa', 'Lsat_1_v5_gn_8_114700' => 'lsa', 'Lsat_1_v5_gn_8_167361' => 'lsa', 'Manes.01G232800' => 'mes', 'Manes.05G011100' => 'mes', 'Manes.06G106100' => 'mes', 'Manes.12G026200' => 'mes', 'Manes.13G027900' => 'mes', 'Manes.14G064500' => 'mes', 'Manes.15G166900' => 'mes', 'Mapoly0021s0056' => 'mpo', 'MBI03_g28535_MAGBIO' => 'mbi', 'MBI10_g27997_MAGBIO' => 'mbi', 'MBI16_g37493_MAGBIO' => 'mbi', 'MBI16_g37494_MAGBIO' => 'mbi', 'MBI16_g39214_MAGBIO' => 'mbi', 'MBI16_g39215_MAGBIO' => 'mbi', 'MBI19_g32708_MAGBIO' => 'mbi', 'MCO16G094' => 'mco', 'MD06G1172600' => 'mdo', 'MD09G1029400' => 'mdo', 'MD09G1288800' => 'mdo', 'MD13G1094600' => 'mdo', 'MD14G1178500' => 'mdo', 'MD16G1095700' => 'mdo', 'MD17G1280700' => 'mdo', 'MD17G1280800' => 'mdo', 'Medtr1g086330' => 'mtr', 'Medtr3g077630' => 'mtr', 'Medtr4g105600' => 'mtr', 'Medtr5g033940' => 'mtr', 'Medtr7g035095' => 'mtr', 'Medtr8g069805' => 'mtr', 'Medtr8g069820' => 'mtr', 'MELO3C002272.2' => 'cme', 'MELO3C009974.2' => 'cme', 'MELO3C010674.2' => 'cme', 'MELO3C012914.2' => 'cme', 'Migut.D00032' => 'egut', 'Migut.E00180' => 'egut', 'Migut.H00095' => 'egut', 'Migut.L01463' => 'egut', 'Migut.O00097' => 'egut', 'MSTRG.11581' => 'ama', 'MSTRG.13360' => 'ama', 'MSTRG.21721' => 'ama', 'MSTRG.23138' => 'ama', 'MSTRG.583' => 'ama', 'Nitab4.5_0000003g0680' => 'nta', 'Nitab4.5_0000053g0270' => 'nta', 'Nitab4.5_0000329g0170' => 'nta', 'Nitab4.5_0000363g0080' => 'nta', 'Nitab4.5_0000514g0070' => 'nta', 'Nitab4.5_0000585g0070' => 'nta', 'Nitab4.5_0000972g0070' => 'nta', 'Nitab4.5_0001819g0060' => 'nta', 'Nitab4.5_0002739g0070' => 'nta', 'Nitab4.5_0003324g0160' => 'nta', 'Nitab4.5_0011124g0020' => 'nta', 'Nitab4.5_0011492g0020' => 'nta', 'Nitab4.5_0012456g0010' => 'nta', 'Nn3g16821' => 'nnu', 'Nn3g21867' => 'nnu', 'Nn4g22715' => 'nnu', 'Nn4g25421' => 'nnu', 'Oeu016400.1' => 'oeu', 'Oeu020908.1' => 'oeu', 'Oeu039246.2' => 'oeu', 'Oeu043036.1' => 'oeu', 'Oeu043809.1' => 'oeu', 'Oeu052571.2' => 'oeu', 'Oeu054611.2' => 'oeu', 'Os01g0171800' => 'osa', 'Os01g0295600' => 'osa', 'Os02g0130600' => 'osa', 'Os07g0658100' => 'osa', 'Peaxi162Scf00058g00219' => 'pax', 'Peaxi162Scf00058g02110' => 'pax', 'Peaxi162Scf00086g01316' => 'pax', 'Peaxi162Scf00089g01857' => 'pax', 'Peaxi162Scf00129g01321' => 'pax', 'Peaxi162Scf00234g00611' => 'pax', 'Peaxi162Scf00689g00126' => 'pax', 'PGR044G0101' => 'pgr', 'PGR044G1096' => 'pgr', 'PGR083G0432' => 'pgr', 'PGR083G0494' => 'pgr', 'PGR102G1795' => 'pgr', 'PGR142G4478' => 'pgr', 'PGSC0003DMG400007296' => 'stu', 'PGSC0003DMG400018095' => 'stu', 'PGSC0003DMG400042346' => 'stu', 'PGSC0003DMG401009684' => 'stu', 'PGSC0003DMG402000410' => 'stu', 'PGSC0003DMG402027085' => 'stu', 'Phvul.001G216300' => 'pvu', 'Phvul.002G064900' => 'pvu', 'Phvul.003G062200' => 'pvu', 'Phvul.003G201600' => 'pvu', 'Phvul.007G211000' => 'pvu', 'Phvul.008G156200' => 'pvu', 'Phvul.009G177400' => 'pvu', 'Potri.001G347400' => 'ptr', 'Potri.002G190200' => 'ptr', 'Potri.010G042600' => 'ptr', 'Potri.012G082400' => 'ptr', 'Potri.014G115200' => 'ptr', 'Potri.015G078200' => 'ptr', 'Pp3c27_3720' => 'ppa', 'Pp3c6_25320' => 'ppa', 'PRCOL_00000389' => 'pco', 'Prupe.1G250800' => 'ppe', 'Prupe.3G004700' => 'ppe', 'Prupe.3G004800' => 'ppe', 'Prupe.3G288000' => 'ppe', 'Prupe.5G171900' => 'ppe', 'Psat0ss3962g0360' => 'psa', 'Psat2g104080' => 'psa', 'Psat4g113760' => 'psa', 'Psat5g000760' => 'psa', 'Psat5g116840' => 'psa', 'Psat6g159400' => 'psa', 'PSO017G4754' => 'pso', 'PSO017G5573' => 'pso', 'PSO063G5112' => 'pso', 'PSO170G1467' => 'pso', 'PSO170G3588' => 'pso', 'PSO170G4430' => 'pso', 'PSO170G6064' => 'pso', 'PSO170G6630' => 'pso', 'PSO210G1313' => 'pso', 'PSO210G6113' => 'pso', 'PSO357G0506' => 'pso', 'PSO357G0589' => 'pso', 'PSO384G0982' => 'pso', 'PSO384G2355' => 'pso', 'PSO478G1251' => 'pso', 'PSO675G6447' => 'pso', 'PSO761G0459' => 'pso', 'PSO832G0684' => 'pso', 'QL02p075619' => 'qlo', 'QL02p075622' => 'qlo', 'QL03p059265' => 'qlo', 'QL10p011013' => 'qlo', 'QL12p034289' => 'qlo', 'QL12p034311' => 'qlo', 'RcHm_v2.0_Chr2g0172561' => 'rch', 'RcHm_v2.0_Chr3g0486601' => 'rch', 'RcHm_v2.0_Chr3g0486611' => 'rch', 'RcHm_v2.0_Chr4g0441901' => 'rch', 'RcHm_v2.0_Chr4g0441931' => 'rch', 'RcHm_v2.0_Chr5g0073411' => 'rch', 'RcHm_v2.0_Chr7g0193381' => 'rch', 'Rhsim01G0293000' => 'rsi', 'Rhsim08G0173700' => 'rsi', 'Rhsim10G0019200' => 'rsi', 'Rhsim12G0043400' => 'rsi', 'Rhsim12G0114100' => 'rsi', 'Rhsim12G0165700' => 'rsi', 'Sabra02G0165400' => 'sbr', 'Sabra10G0024800' => 'sbr', 'Sabra12G0059100' => 'sbr', 'Sabra14G0085300' => 'sbr', 'Sabra15G0102800' => 'sbr', 'Sabra16G0227000' => 'sbr', 'SalBow1G5960' => 'sbo', 'SalBow2G2562' => 'sbo', 'SalBow5G0068' => 'sbo', 'SalBow5G3334' => 'sbo', 'SalBow6G2036' => 'sbo', 'SalBow8G2800' => 'sbo', 'Sc03g0007650' => 'sci', 'Sc05g0000160' => 'sci', 'Sc11g0001070' => 'sci', 'Sc12g0005250' => 'sci', 'Sed0006845' => 'sed', 'Sed0017041' => 'sed', 'Sed0018361' => 'sed', 'Sed0025402' => 'sed', 'Sed0025875' => 'sed', 'SEGI_22721' => 'sgi', 'SEGI_29289' => 'sgi', 'SEGI_30146' => 'sgi', 'SGA_v2.0_scaffold481G52332' => 'sas', 'SGA_v2.0_scaffold50G18431' => 'sas', 'SGA_v2.0_scaffold80G25697' => 'sas', 'SGA_v2.0_scaffold90G27901' => 'sas', 'SHI07793' => 'shi', 'SHI17079' => 'shi', 'SHI17731' => 'shi', 'SHI33401' => 'shi', 'SHI33402' => 'shi', 'SHI43043' => 'shi', 'SMO164G0213' => 'smo', 'SMO337G0087' => 'smo', 'Solyc03g112840.2' => 'sly', 'Solyc06g005250.3' => 'sly', 'Solyc06g009380.3' => 'sly', 'Solyc06g011560.3' => 'sly', 'Solyc06g071540.3' => 'sly', 'Solyc11g066310.2' => 'sly', 'Sopen03g031920' => 'spe', 'Sopen06g001230' => 'spe', 'Sopen06g004110' => 'spe', 'Sopen06g006780' => 'spe', 'Sopen06g027830' => 'spe', 'Sopen11g026050' => 'spe', 'Sp1g09360' => 'spa', 'Sp2g16850' => 'spa', 'Sp2g26100' => 'spa', 'Sp4g29100' => 'spa', 'Sp5g25610' => 'spa', 'TAR362G0193' => 'tar', 'TAR622G0825' => 'tar', 'TAR629G0446' => 'tar', 'TAR633G1262' => 'tar', 'THA.LOC104802132' => 'tha', 'THA.LOC104805383' => 'tha', 'THA.LOC104809601' => 'tha', 'THA.LOC104821476' => 'tha', 'THA.LOC104822975' => 'tha', 'Thecc.01G321900' => 'tca', 'Thecc.02G254500' => 'tca', 'Thecc.03G014300' => 'tca', 'Thecc.04G013900' => 'tca', 'Thhalv10001786m.g' => 'esa', 'Thhalv10004260m.g' => 'esa', 'Thhalv10004507m.g' => 'esa', 'Thhalv10008229m.g' => 'esa', 'Thhalv10018876m.g' => 'esa', 'TPR.G11483' => 'tpr', 'TPR.G20688' => 'tpr', 'TPR.G21081' => 'tpr', 'TPR.G21095' => 'tpr', 'TPR.G24787' => 'tpr', 'TPR.G24807' => 'tpr', 'TPR.G3060' => 'tpr', 'TPR.G37457' => 'tpr', 'TPR.G5151' => 'tpr', 'TPR.G9067' => 'tpr', 'TWI12G0451' => 'twi', 'TWI14G0783' => 'twi', 'TWI36G0823' => 'twi', 'TWI39G0818' => 'twi', 'unitig_52.g17663' => 'ugi', 'unitig_60.g25649' => 'ugi', 'unitig_61.g26477' => 'ugi', 'vmacro01153' => 'vma', 'vmacro02373' => 'vma', 'vmacro05847' => 'vma', 'vmacro15095' => 'vma', 'vmacro16222' => 'vma', 'vmacro16225' => 'vma', 'vmacro16621' => 'vma', 'vmacro19398' => 'vma', 'VMungo0251G3009' => 'vmu', 'VMungo0720G1090' => 'vmu', 'VMungo0720G2761' => 'vmu', 'VMungo1215G0368' => 'vmu', 'VMungo1215G1584' => 'vmu', 'VMungo1309G0683' => 'vmu', 'VMungo1383G0167' => 'vmu', 'VMungo1383G1504' => 'vmu', 'Zm00001eb028620' => 'zma', 'Zm00001eb066550' => 'zma', 'Zm00001eb110710' => 'zma', 'Zm00001eb122910' => 'zma', 'Zm00001eb162500' => 'zma', 'Zm00001eb231180' => 'zma', 'Zm00001eb329660' => 'zma', 'Zm00001eb412230' => 'zma' ) $gf_id = 'HOM05D000957' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000957' ) $data_identifier = 'HOM05D000957' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 7, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 4, 'shi' => (int) 6, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 8, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412230' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1